Roll damage as usual, except a Dark Weapon does damage simultaneously direct to Hit Points or M.D.C. (damage automatically adjusts to the nature of the target)
So based on damage direct to Hit Points, do they bypass armor or do they do MDC to the armor until its gone?
There's also this bit:
Soulcraft weapons also inflict damage to energy barriers, whether they are created via technology, magic or psionics, such as force fields, Telekinetic shields, and magic walls.
I'm not sure if it's trying to imply that only energy barriers get in its way, as there's no mention of armor anywhere in the description. And if they are stopped by armor, then who cares that they do damage to hit points. A vibro-knife also does damage to hit points if the SDC creature isn't wearing armor